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Topology and Geometry of Biopolymers
 
Edited by: Erica Flapan Pomona College, Claremont, CA
Helen Wong Claremont McKenna College, Claremont, CA
Topology and Geometry of Biopolymers
Softcover ISBN:  978-1-4704-4840-0
Product Code:  CONM/746
List Price: $120.00
MAA Member Price: $108.00
AMS Member Price: $96.00
eBook ISBN:  978-1-4704-5456-2
Product Code:  CONM/746.E
List Price: $120.00
MAA Member Price: $108.00
AMS Member Price: $96.00
Softcover ISBN:  978-1-4704-4840-0
eBook: ISBN:  978-1-4704-5456-2
Product Code:  CONM/746.B
List Price: $240.00 $180.00
MAA Member Price: $216.00 $162.00
AMS Member Price: $192.00 $144.00
Topology and Geometry of Biopolymers
Click above image for expanded view
Topology and Geometry of Biopolymers
Edited by: Erica Flapan Pomona College, Claremont, CA
Helen Wong Claremont McKenna College, Claremont, CA
Softcover ISBN:  978-1-4704-4840-0
Product Code:  CONM/746
List Price: $120.00
MAA Member Price: $108.00
AMS Member Price: $96.00
eBook ISBN:  978-1-4704-5456-2
Product Code:  CONM/746.E
List Price: $120.00
MAA Member Price: $108.00
AMS Member Price: $96.00
Softcover ISBN:  978-1-4704-4840-0
eBook ISBN:  978-1-4704-5456-2
Product Code:  CONM/746.B
List Price: $240.00 $180.00
MAA Member Price: $216.00 $162.00
AMS Member Price: $192.00 $144.00
  • Book Details
     
     
    Contemporary Mathematics
    Volume: 7462020; 246 pp
    MSC: Primary 57; 05; 92; 82; 65

    This book contains the proceedings of the AMS Special Session on Topology of Biopolymers, held from April 21–22, 2018, at Northeastern University, Boston, MA.

    The papers cover recent results on the topology and geometry of DNA and protein knotting using techniques from knot theory, spatial graph theory, differential geometry, molecular simulations, and laboratory experimentation. They include current work on the following topics: the density and supercoiling of DNA minicircles; the dependence of DNA geometry on its amino acid sequence; random models of DNA knotting; topological models of DNA replication and recombination; theories of how and why proteins knot; topological and geometric approaches to identifying entanglements in proteins; and topological and geometric techniques to predict protein folding rates.

    All of the articles are written as surveys intended for a broad interdisciplinary audience with a minimum of prerequisites. In addition to being a useful reference for experts, this book also provides an excellent introduction to the fast-moving field of topology and geometry of biopolymers.

    Readership

    Graduate students and research mathematicians interested in applications of topology and DNA proteins.

  • Table of Contents
     
     
    • The topology and geometry of DNA
    • Jonathan M. Fogg and Lynn Zechiedrich — Beyond the static DNA model of Watson and Crick
    • P. Liu, R. Polischuk, Y. Diao and J. Arsuaga — Characterizing the topology of kinetoplast DNA using random knotting
    • Alex Kasman and Brenton LeMesurier — Did sequence dependent geometry influence the evolutionof the genetic code?
    • Tetsuo Deguchi and Erica Uehara — Topological sum rules in the knotting probabilities of DNA
    • Dorothy Buck and Danielle O’Donnol — Knotting of replication intermediates is narrowly restricted
    • Allison H. Moore and Mariel Vazquez — Recent advances on the non-coherent band surgery model for site-specific recombination
    • The topology and geometry of proteins
    • Sophie E. Jackson — Why are there knots in proteins?
    • Ana Nunes and Patrícia F. N. Faísca — Knotted proteins: Tie etiquette in structural biology
    • Dimos Goundaroulis, Julien Dorier and Andrzej Stasiak — Knotoids and protein structure
    • Kenneth C. Millett — Topological linking and entanglement in proteins
    • Eleni Panagiotou and Kevin W. Plaxco — A topological study of protein folding kinetics
  • Additional Material
     
     
  • Requests
     
     
    Review Copy – for publishers of book reviews
    Permission – for use of book, eBook, or Journal content
    Accessibility – to request an alternate format of an AMS title
Volume: 7462020; 246 pp
MSC: Primary 57; 05; 92; 82; 65

This book contains the proceedings of the AMS Special Session on Topology of Biopolymers, held from April 21–22, 2018, at Northeastern University, Boston, MA.

The papers cover recent results on the topology and geometry of DNA and protein knotting using techniques from knot theory, spatial graph theory, differential geometry, molecular simulations, and laboratory experimentation. They include current work on the following topics: the density and supercoiling of DNA minicircles; the dependence of DNA geometry on its amino acid sequence; random models of DNA knotting; topological models of DNA replication and recombination; theories of how and why proteins knot; topological and geometric approaches to identifying entanglements in proteins; and topological and geometric techniques to predict protein folding rates.

All of the articles are written as surveys intended for a broad interdisciplinary audience with a minimum of prerequisites. In addition to being a useful reference for experts, this book also provides an excellent introduction to the fast-moving field of topology and geometry of biopolymers.

Readership

Graduate students and research mathematicians interested in applications of topology and DNA proteins.

  • The topology and geometry of DNA
  • Jonathan M. Fogg and Lynn Zechiedrich — Beyond the static DNA model of Watson and Crick
  • P. Liu, R. Polischuk, Y. Diao and J. Arsuaga — Characterizing the topology of kinetoplast DNA using random knotting
  • Alex Kasman and Brenton LeMesurier — Did sequence dependent geometry influence the evolutionof the genetic code?
  • Tetsuo Deguchi and Erica Uehara — Topological sum rules in the knotting probabilities of DNA
  • Dorothy Buck and Danielle O’Donnol — Knotting of replication intermediates is narrowly restricted
  • Allison H. Moore and Mariel Vazquez — Recent advances on the non-coherent band surgery model for site-specific recombination
  • The topology and geometry of proteins
  • Sophie E. Jackson — Why are there knots in proteins?
  • Ana Nunes and Patrícia F. N. Faísca — Knotted proteins: Tie etiquette in structural biology
  • Dimos Goundaroulis, Julien Dorier and Andrzej Stasiak — Knotoids and protein structure
  • Kenneth C. Millett — Topological linking and entanglement in proteins
  • Eleni Panagiotou and Kevin W. Plaxco — A topological study of protein folding kinetics
Review Copy – for publishers of book reviews
Permission – for use of book, eBook, or Journal content
Accessibility – to request an alternate format of an AMS title
Please select which format for which you are requesting permissions.